PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029182.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SRS
Protein Properties Length: 365aa    MW: 36800.2 Da    PI: 7.8688
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029182.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.81.7e-651343033154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa................aeaaskrkrelkskkqs 84 
                   g++sCqdCGnqakkdCah RCRtCCksrg+ C thvkstWvpaakrrerqq+laaa++  ++++                  ++skr rel +++ +
  Aco029182.1 134 GGGTSCQDCGNQAKKDCAHVRCRTCCKSRGLPCPTHVKSTWVPAAKRRERQQHLAAAAAALQRHRashsaspasgggggsgGVDSSKRARELCAARPT 231
                  5778*************************************************998876655555567799******999888999999998666666 PP

       DUF702  85 alsstk.lssaes.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  a+ +++ ++ a+s    + + s+P+evss+avfrc+rvs +d++++e+aYqtav+igGhvfkGiLyd+G+++
  Aco029182.1 232 AIVTATaTALASSgGGGTVAGSFPSEVSSAAVFRCIRVSPMDEADDEFAYQTAVNIGGHVFKGILYDHGPDS 303
                  5544430333333134566778************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-63136302IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.8E-26138180IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.0E-24254301IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0048467Biological Processgynoecium development
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAAGFTLGGG GSHRGARGGG DHDHHPPEDD DDDAPPHNHH HHHLFLYTTP SHTHTNTTHS  60
SSSYTRGFEL WQQQQQQQQQ QQQQTQSQSQ FAAAAALLGF SGEGAAPPTM GGGGGGGGGG  120
GAAAAAGRGR GGGGGGTSCQ DCGNQAKKDC AHVRCRTCCK SRGLPCPTHV KSTWVPAAKR  180
RERQQHLAAA AAALQRHRAS HSASPASGGG GGSGGVDSSK RARELCAARP TAIVTATATA  240
LASSGGGGTV AGSFPSEVSS AAVFRCIRVS PMDEADDEFA YQTAVNIGGH VFKGILYDHG  300
PDSHQYGGEP SSSPAAANAA AALAMSSSAA AMASAGLLDP SAVYPAPISA FMAGTQFFPQ  360
HPRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400794.14e-96PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_009400795.14e-96PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLM0SYH07e-90M0SYH0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P14410_0012e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-46Lateral root primordium (LRP) protein-related